PANDITplus

Below is a list of pfam present in genes that are annotated for the KEGG pathway Phenylalanine, tyrosine and tryptophan biosynthesis [KEGG]. This KEGG pathway is of type Metabolism: Amino Acid Metabolism.

ID	Name	Type	Description	# Aligned Sequences	Aignment length in AA
PF00004	AAA	family	ATPase family associated with various cellular activities (AAA)	245	410
PF00005	ABC_tran	domain	ABC transporter	65	333
PF00009	GTP_EFTU	domain	Elongation factor Tu GTP binding domain	222	430
PF00013	KH_1	domain	KH domain	433	93
PF00014	Kunitz_BPTI	domain	Kunitz/Bovine pancreatic trypsin inhibitor domain	153	80
PF00042	Globin	domain	Globin	76	167
PF00044	Gp_dh_N	domain	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	114	210
PF00056	Ldh_1_N	family	lactate/malate dehydrogenase, NAD binding domain	30	175
PF00070	Pyr_redox	domain	Pyridine nucleotide-disulphide oxidoreductase	131	130
PF00071	Ras	domain	Ras family	61	229
PF00072	Response_reg	domain	Response regulator receiver domain	54	158
PF00078	RVT_1	family	Reverse transcriptase (RNA-dependent DNA polymerase)	164	397
PF00080	Sod_Cu	domain	Copper/zinc superoxide dismutase (SODC)	28	203
PF00098	zf-CCHC	domain	Zinc knuckle	208	18
PF00101	RuBisCO_small	domain	Ribulose bisphosphate carboxylase, small chain	49	128
PF00106	adh_short	domain	short chain dehydrogenase	269	218
PF00107	ADH_zinc_N	family	Zinc-binding dehydrogenase	110	216
PF00109	ketoacyl-synt	domain	Beta-ketoacyl synthase, N-terminal domain	169	347
PF00117	GATase	domain	Glutamine amidotransferase class-I	137	292
PF00118	Cpn60_TCP1	family	TCP-1/cpn60 chaperonin family	41	625
PF00121	TIM	domain	Triosephosphate isomerase	56	283
PF00129	MHC_I	domain	Class I Histocompatibility antigen, domains alpha 1 and 2	25	181
PF00137	ATP-synt_C	family	ATP synthase subunit C	35	70
PF00141	peroxidase	family	Peroxidase	303	599
PF00142	Fer4_NifH	domain	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	16	282
PF00152	tRNA-synt_2	family	tRNA synthetases class II (D, K and N)	109	625
PF00153	Mito_carr	family	Mitochondrial carrier protein	210	152
PF00155	Aminotran_1_2	domain	Aminotransferase class I and II	48	526
PF00162	PGK	domain	Phosphoglycerate kinase	25	530
PF00164	Ribosomal_S12	family	Ribosomal protein S12	20	147
PF00165	HTH_AraC	domain	Bacterial regulatory helix-turn-helix proteins, AraC family	90	50
PF00166	Cpn10	domain	Chaperonin 10 Kd subunit	48	127
PF00169	PH	domain	PH domain	149	333
PF00171	Aldedh	family	Aldehyde dehydrogenase family	122	616
PF00174	Oxidored_molyb	domain	Oxidoreductase molybdopterin binding domain	15	261
PF00175	NAD_binding_1	domain	Oxidoreductase NAD-binding domain	73	149
PF00181	Ribosomal_L2	domain	Ribosomal Proteins L2, RNA binding domain	62	94
PF00190	Cupin_1	domain	Cupin	226	379
PF00191	Annexin	family	Annexin	181	81
PF00202	Aminotran_3	domain	Aminotransferase class-III	19	412
PF00205	TPP_enzyme_M	domain	Thiamine pyrophosphate enzyme, central domain	23	187
PF00208	ELFV_dehydrog	domain	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	127	330
PF00215	OMPdecase	domain	Orotidine 5'-phosphate decarboxylase / HUMPS family	92	402
PF00218	IGPS	domain	Indole-3-glycerol phosphate synthase	20	282
PF00220	Hormone_4	family	Neurohypophysial hormones, N-terminal Domain	8	9
PF00239	Resolvase	domain	Resolvase, N terminal domain	16	167
PF00250	Fork_head	domain	Fork head domain	21	140
PF00254	FKBP_C	domain	FKBP-type peptidyl-prolyl cis-trans isomerase	184	253
PF00258	Flavodoxin_1	domain	Flavodoxin	94	240
PF00261	Tropomyosin	family	Tropomyosin	8	237
PF00266	Aminotran_5	domain	Aminotransferase class-V	14	384
PF00269	SASP	family	Small, acid-soluble spore proteins, alpha/beta type	9	62
PF00275	EPSP_synthase	family	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	35	506
PF00284	Cytochrom_B559a	family	Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit	14	40
PF00288	GHMP_kinases	family	GHMP kinases putative ATP-binding protein	256	549
PF00289	CPSase_L_chain	domain	Carbamoyl-phosphate synthase L chain, N-terminal domain	20	135
PF00290	Trp_syntA	domain	Tryptophan synthase alpha chain	21	283
PF00291	PALP	family	Pyridoxal-phosphate dependent enzyme	97	436
PF00294	PfkB	family	pfkB family carbohydrate kinase	85	404
PF00300	PGAM	domain	Phosphoglycerate mutase family	279	504
PF00317	Ribonuc_red_lgN	domain	Ribonucleotide reductase, all-alpha domain	82	176
PF00333	Ribosomal_S5	domain	Ribosomal protein S5, N-terminal domain	13	68
PF00334	NDK	domain	Nucleoside diphosphate kinase	12	135
PF00339	Arrestin_N	domain	Arrestin (or S-antigen), N-terminal domain	51	205
PF00350	Dynamin_N	family	Dynamin family	84	363
PF00351	Biopterin_H	domain	Biopterin-dependent aromatic amino acid hydroxylase	6	332
PF00357	Integrin_alpha	family	Integrin alpha cytoplasmic region	27	15
PF00366	Ribosomal_S17	domain	Ribosomal protein S17	15	71
PF00368	HMG-CoA_red	family	Hydroxymethylglutaryl-coenzyme A reductase	21	433
PF00373	Band_41	domain	FERM domain (Band 4.1 family)	8	210
PF00381	PTS-HPr	domain	PTS HPr component phosphorylation site	11	87
PF00382	TFIIB	domain	Transcription factor TFIIB repeat	12	74
PF00385	Chromo	family	'chromo' (CHRromatin Organisation MOdifier) domain	188	89
PF00388	PI-PLC-X	family	Phosphatidylinositol-specific phospholipase C, X domain	13	154
PF00390	malic	domain	Malic enzyme, N-terminal domain	56	199
PF00392	GntR	family	Bacterial regulatory proteins, gntR family	27	64
PF00401	ATP-synt_DE	domain	ATP synthase, Delta/Epsilon chain, long alpha-helix domain	20	51
PF00406	ADK	domain	Adenylate kinase	23	191
PF00407	Bet_v_I	domain	Pathogenesis-related protein Bet v I family	35	162
PF00408	PGM_PMM_IV	family	Phosphoglucomutase/phosphomannomutase, C-terminal domain	16	114
PF00410	Ribosomal_S8	domain	Ribosomal protein S8	20	172
PF00414	MAP1B_neuraxin	repeat	Neuraxin and MAP1B repeat	11	17
PF00416	Ribosomal_S13	family	Ribosomal protein S13/S18	15	132
PF00421	PSII	family	Photosystem II protein	19	525
PF00425	Chorismate_bind	family	chorismate binding enzyme	27	326
PF00427	PBS_linker_poly	family	Phycobilisome Linker polypeptide	24	150
PF00428	Ribosomal_60s	family	60s Acidic ribosomal protein	24	119
PF00439	Bromodomain	domain	Bromodomain	67	94
PF00441	Acyl-CoA_dh_1	domain	Acyl-CoA dehydrogenase, C-terminal domain	62	179
PF00456	Transketolase_N	domain	Transketolase, thiamine diphosphate binding domain	12	343
PF00464	SHMT	domain	Serine hydroxymethyltransferase	12	402
PF00465	Fe-ADH	family	Iron-containing alcohol dehydrogenase	14	419
PF00473	CRF	family	Corticotropin-releasing factor family	7	44
PF00485	PRK	domain	Phosphoribulokinase / Uridine kinase family	12	222
PF00486	Trans_reg_C	domain	Transcriptional regulatory protein, C terminal	377	119
PF00490	ALAD	domain	Delta-aminolevulinic acid dehydratase	10	333
PF00491	Arginase	domain	Arginase family	11	346
PF00494	SQS_PSY	domain	Squalene/phytoene synthase	15	329
PF00497	SBP_bac_3	domain	Bacterial extracellular solute-binding proteins, family 3	81	297
PF00501	AMP-binding	family	AMP-binding enzyme	408	777
PF00503	G-alpha	domain	G-protein alpha subunit	25	402
PF00512	HisKA	domain	His Kinase A (phosphoacceptor) domain	270	102
PF00525	Crystallin	family	Alpha crystallin A chain, N terminal	13	59
PF00531	Death	domain	Death domain	92	98
PF00533	BRCT	family	BRCA1 C Terminus (BRCT) domain	116	148
PF00534	Glycos_transf_1	family	Glycosyl transferases group 1	78	236
PF00543	P-II	domain	Nitrogen regulatory protein P-II	95	134
PF00545	Ribonuclease	domain	ribonuclease	20	115
PF00547	Urease_gamma	domain	Urease, gamma subunit	5	100
PF00563	EAL	domain	EAL domain	55	271
PF00570	HRDC	domain	HRDC domain	29	83
PF00578	AhpC-TSA	domain	AhpC/TSA family	27	189
PF00579	tRNA-synt_1b	family	tRNA synthetases class I (W and Y)	41	402
PF00581	Rhodanese	domain	Rhodanese-like domain	49	159
PF00583	Acetyltransf_1	family	Acetyltransferase (GNAT) family	244	150
PF00585	Thr_dehydrat_C	domain	C-terminal regulatory domain of Threonine dehydratase	16	94
PF00587	tRNA-synt_2b	domain	tRNA synthetase class II core domain (G, H, P, S and T)	126	390
PF00588	SpoU_methylase	family	SpoU rRNA Methylase family	143	214
PF00591	Glycos_transf_3	family	Glycosyl transferase family, a/b domain	25	283
PF00610	DEP	domain	Domain found in Dishevelled, Egl-10, and Pleckstrin	36	100
PF00617	RasGEF	family	RasGEF domain	12	248
PF00627	UBA	domain	UBA/TS-N domain	161	45
PF00633	HHH	motif	Helix-hairpin-helix motif	108	30
PF00637	Clathrin	family	Region in Clathrin and VPS	63	182
PF00638	Ran_BP1	family	RanBP1 domain	8	127
PF00639	Rotamase	domain	PPIC-type PPIASE domain	14	111
PF00645	zf-PARP	domain	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	14	94
PF00670	AdoHcyase_NAD	domain	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	16	164
PF00677	Lum_binding	domain	Lumazine binding domain	20	97
PF00682	HMGL-like	family	HMGL-like	20	330
PF00684	DnaJ_CXXCXGXG	family	DnaJ central domain (4 repeats)	22	89
PF00685	Sulfotransfer_1	domain	Sulfotransferase domain	57	445
PF00691	OmpA	family	OmpA family	21	104
PF00697	PRAI	domain	N-(5'phosphoribosyl)anthranilate (PRA) isomerase	25	252
PF00699	Urease_beta	domain	Urease beta subunit	13	106
PF00704	Glyco_hydro_18	domain	Glycosyl hydrolases family 18	171	696
PF00708	Acylphosphatase	domain	Acylphosphatase	5	89
PF00709	Adenylsucc_synt	domain	Adenylosuccinate synthetase	11	444
PF00710	Asparaginase	domain	Asparaginase	13	332
PF00723	Glyco_hydro_15	family	Glycosyl hydrolases family 15	26	548
PF00729	Viral_coat	domain	Viral coat protein (S domain)	13	245
PF00731	AIRC	domain	AIR carboxylase	13	160
PF00736	EF1_GNE	domain	EF-1 guanine nucleotide exchange domain	14	94
PF00749	tRNA-synt_1c	domain	tRNA synthetases class I (E and Q), catalytic domain	18	343
PF00750	tRNA-synt_1d	family	tRNA synthetases class I (R)	9	375
PF00764	Arginosuc_synth	family	Arginosuccinate synthase	13	416
PF00766	ETF_alpha	domain	Electron transfer flavoprotein FAD-binding domain	39	102
PF00781	DAGK_cat	family	Diacylglycerol kinase catalytic domain (presumed)	133	291
PF00790	VHS	family	VHS domain	16	157
PF00793	DAHP_synth_1	domain	DAHP synthetase I family	29	345
PF00797	Acetyltransf_2	family	N-acetyltransferase	10	263
PF00800	PDT	family	Prephenate dehydratase	11	194
PF00806	PUF	repeat	Pumilio-family RNA binding repeat	50	37
PF00808	CBFD_NFYB_HMF	domain	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	28	69
PF00809	Pterin_bind	domain	Pterin binding enzyme	43	292
PF00813	FliP	family	FliP family	17	212
PF00827	Ribosomal_L15e	family	Ribosomal L15	7	193
PF00834	Ribul_P_3_epim	domain	Ribulose-phosphate 3 epimerase family	14	215
PF00835	SNAP-25	family	SNAP-25 family	13	75
PF00853	Runt	domain	Runt domain	8	138
PF00857	Isochorismatase	family	Isochorismatase family	14	220
PF00861	Ribosomal_L18p	family	Ribosomal L18p/L5e family	34	150
PF00868	Transglut_N	domain	Transglutaminase family	17	139
PF00872	Transposase_mut	family	Transposase, Mutator family	14	414
PF00875	DNA_photolyase	domain	DNA photolyase	25	215
PF00880	Nebulin	repeat	Nebulin repeat	137	29
PF00885	DMRL_synthase	domain	6,7-dimethyl-8-ribityllumazine synthase	13	159
PF00887	ACBP	domain	Acyl CoA binding protein	14	90
PF00888	Cullin	family	Cullin family	51	1252
PF00890	FAD_binding_2	family	FAD binding domain	66	708
PF00899	ThiF	family	ThiF family	95	221
PF00903	Glyoxalase	domain	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	88	325
PF00921	Lipoprotein_2	family	Borrelia lipoprotein	16	199
PF00925	GTP_cyclohydro2	family	GTP cyclohydrolase II	16	193
PF00934	PE	family	PE family	9	94
PF00956	NAP	family	Nucleosome assembly protein (NAP)	14	396
PF00977	His_biosynth	family	Histidine biosynthesis protein	147	349
PF00981	Rota_NS53	family	Rotavirus RNA-binding Protein 53 (NS53)	11	496
PF00989	PAS	domain	PAS fold	49	134
PF00994	MoCF_biosynth	domain	Probable molybdopterin binding domain	154	287
PF01001	HCV_NS4b	family	Hepatitis C virus non-structural protein NS4b	11	199
PF01011	PQQ	repeat	PQQ enzyme repeat	131	41
PF01012	ETF	domain	Electron transfer flavoprotein domain	37	220
PF01022	HTH_5	domain	Bacterial regulatory protein, arsR family	42	108
PF01026	TatD_DNase	family	TatD related DNase	119	754
PF01035	DNA_binding_1	domain	6-O-methylguanine DNA methyltransferase, DNA binding domain	16	89
PF01037	AsnC_trans_reg	family	AsnC family	19	104
PF01041	DegT_DnrJ_EryC1	domain	DegT/DnrJ/EryC1/StrS aminotransferase family	38	473
PF01042	Ribonuc_L-PSP	domain	Endoribonuclease L-PSP	31	159
PF01047	MarR	family	MarR family	44	144
PF01048	PNP_UDP_1	domain	Phosphorylase family	16	276
PF01053	Cys_Met_Meta_PP	domain	Cys/Met metabolism PLP-dependent enzyme	30	475
PF01070	FMN_dh	domain	FMN-dependent dehydrogenase	13	394
PF01071	GARS_A	domain	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	19	181
PF01073	3Beta_HSD	family	3-beta hydroxysteroid dehydrogenase/isomerase family	12	307
PF01076	Mob_Pre	family	Plasmid recombination enzyme	18	234
PF01078	Mg_chelatase	family	Magnesium chelatase, subunit ChlI	21	362
PF01081	Aldolase	family	KDPG and KHG aldolase	5	196
PF01090	Ribosomal_S19e	family	Ribosomal protein S19e	8	142
PF01112	Asparaginase_2	domain	Asparaginase	7	365
PF01113	DapB_N	domain	Dihydrodipicolinate reductase, N-terminus	99	167
PF01115	F_actin_cap_B	family	F-actin capping protein, beta subunit	5	294
PF01116	F_bP_aldolase	domain	Fructose-bisphosphate aldolase class-II	17	395
PF01118	Semialdhyde_dh	domain	Semialdehyde dehydrogenase, NAD binding domain	191	186
PF01121	CoaE	family	Dephospho-CoA kinase	13	190
PF01132	EFP	domain	Elongation factor P (EF-P)	11	192
PF01134	GIDA	family	Glucose inhibited division protein A	123	528
PF01135	PCMT	family	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)	9	232
PF01136	Peptidase_U32	family	Peptidase family U32	45	326
PF01137	RTC	domain	RNA 3'-terminal phosphate cyclase	29	384
PF01140	Gag_MA	family	Matrix protein (MA), p15	9	139
PF01152	Bac_globin	family	Bacterial-like globin	12	126
PF01162	GatB	family	PET112 family, C terminal region	30	107
PF01170	UPF0020	domain	Putative RNA methylase family UPF0020	18	227
PF01174	SNO	family	SNO glutamine amidotransferase family	5	211
PF01180	DHO_dh	domain	Dihydroorotate dehydrogenase	15	387
PF01188	MR_MLE	domain	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	7	275
PF01192	RNA_pol_Rpb6	family	RNA polymerase Rpb6	34	59
PF01202	SKI	domain	Shikimate kinase	100	263
PF01206	SirA	family	SirA-like protein	8	75
PF01210	NAD_Gly3P_dh_N	family	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	51	211
PF01212	Beta_elim_lyase	family	Beta-eliminating lyase	54	589
PF01220	DHquinase_II	domain	Dehydroquinase class II	7	171
PF01225	Mur_ligase	domain	Mur ligase family, catalytic domain	211	130
PF01230	HIT	domain	HIT domain	26	114
PF01243	Pyridox_oxidase	domain	Pyridoxamine 5'-phosphate oxidase	147	161
PF01244	Peptidase_M19	family	Membrane dipeptidase (Peptidase family M19)	51	501
PF01250	Ribosomal_S6	domain	Ribosomal protein S6	12	92
PF01261	AP_endonuc_2	domain	Xylose isomerase-like TIM barrel	317	490
PF01262	AlaDh_PNT_C	domain	Alanine dehydrogenase/PNT, C-terminal domain	102	233
PF01264	Chorismate_synt	family	Chorismate synthase	14	547
PF01266	DAO	domain	FAD dependent oxidoreductase	545	1815
PF01276	OKR_DC_1	domain	Orn/Lys/Arg decarboxylase, major domain	11	478
PF01287	eIF-5a	family	Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold	8	72
PF01321	Creatinase_N	domain	Creatinase	2	164
PF01322	Cytochrom_C_2	domain	Cytochrome C'	16	138
PF01325	Fe_dep_repress	domain	Iron dependent repressor, N-terminal DNA binding domain	10	62
PF01326	PPDK_N	family	Pyruvate phosphate dikinase, PEP/pyruvate binding domain	24	480
PF01339	CheB_methylest	domain	CheB methylesterase	8	186
PF01343	Peptidase_S49	family	Peptidase family S49	20	159
PF01348	Intron_maturas2	family	Type II intron maturase	25	184
PF01361	Tautomerase	domain	Tautomerase enzyme	31	66
PF01365	RYDR_ITPR	family	RIH domain	18	250
PF01369	Sec7	domain	Sec7 domain	11	233
PF01370	Epimerase	family	NAD dependent epimerase/dehydratase family	106	413
PF01380	SIS	family	SIS domain	46	162
PF01381	HTH_3	domain	Helix-turn-helix	194	66
PF01383	CpcD	domain	CpcD/allophycocyanin linker domain	22	61
PF01384	PHO4	family	Phosphate transporter family	27	714
PF01406	tRNA-synt_1e	family	tRNA synthetases class I (C) catalytic domain	12	442
PF01408	GFO_IDH_MocA	family	Oxidoreductase family, NAD-binding Rossmann fold	49	165
PF01409	tRNA-synt_2d	domain	tRNA synthetases class II core domain (F)	47	323
PF01410	COLFI	family	Fibrillar collagen C-terminal domain	12	227
PF01412	ArfGap	domain	Putative GTPase activating protein for Arf	23	148
PF01417	ENTH	domain	ENTH domain	21	156
PF01420	Methylase_S	family	Type I restriction modification DNA specificity domain	54	209
PF01435	Peptidase_M48	family	Peptidase family M48	22	297
PF01440	Gemini_AL2	family	Geminivirus AL2 protein	26	139
PF01466	Skp1	domain	Skp1 family, dimerisation domain	16	86
PF01467	CTP_transf_2	domain	Cytidylyltransferase	66	302
PF01468	GA	domain	GA module	100	61
PF01470	Peptidase_C15	domain	Pyroglutamyl peptidase	9	212
PF01471	PG_binding_1	domain	Putative peptidoglycan binding domain	17	73
PF01472	PUA	family	PUA domain	109	98
PF01474	DAHP_synth_2	family	Class-II DAHP synthetase family	9	442
PF01479	S4	family	S4 domain	158	52
PF01487	DHquinase_I	domain	Type I 3-dehydroquinase	16	249
PF01488	Shikimate_DH	family	Shikimate / quinate 5-dehydrogenase	59	184
PF01491	Frataxin_Cyay	domain	Frataxin-like domain	6	117
PF01493	GXGXG	family	GXGXG motif	29	286
PF01494	FAD_binding_3	family	FAD binding domain	21	461
PF01498	Transposase_5	family	Transposase	10	104
PF01502	PRA-CH	family	Phosphoribosyl-AMP cyclohydrolase	18	77
PF01503	PRA-PH	family	Phosphoribosyl-ATP pyrophosphohydrolase	17	97
PF01510	Amidase_2	domain	N-acetylmuramoyl-L-alanine amidase	59	225
PF01515	PTA_PTB	family	Phosphate acetyl/butaryl transferase	21	346
PF01522	Polysacc_deac_1	family	Polysaccharide deacetylase	110	300
PF01527	Transposase_8	family	Transposase	47	106
PF01538	HCV_NS2	family	Hepatitis C virus non-structural protein NS2	17	287
PF01539	HCV_env	family	Hepatitis C virus envelope glycoprotein E1	4	190
PF01547	SBP_bac_1	family	Bacterial extracellular solute-binding protein	155	586
PF01551	Peptidase_M23	family	Peptidase family M23	283	166
PF01552	Pico_P2B	family	Picornavirus 2B protein	10	101
PF01564	Spermine_synth	family	Spermine/spermidine synthase	17	352
PF01571	GCV_T	domain	Glycine cleavage T-protein (aminomethyl transferase)	23	485
PF01575	MaoC_dehydratas	family	MaoC like domain	32	151
PF01580	FtsK_SpoIIIE	family	FtsK/SpoIIIE family	24	306
PF01583	APS_kinase	domain	Adenylylsulphate kinase	20	166
PF01584	CheW	domain	CheW-like domain	255	228
PF01588	tRNA_bind	domain	Putative tRNA binding domain	45	124
PF01591	6PF2K	domain	6-phosphofructo-2-kinase	11	245
PF01592	NifU_N	family	NifU-like N terminal domain	16	142
PF01593	Amino_oxidase	domain	Flavin containing amine oxidoreductase	92	746
PF01596	Methyltransf_3	domain	O-methyltransferase	8	216
PF01597	GCV_H	domain	Glycine cleavage H-protein	14	131
PF01610	Transposase_12	family	Transposase	19	380
PF01614	IclR	family	Bacterial transcriptional regulator	23	205
PF01629	DUF22	family	Domain of unknown function DUF22	9	112
PF01636	APH	family	Phosphotransferase enzyme family	278	750
PF01644	Chitin_synth_1	family	Chitin synthase	15	170
PF01645	Glu_synthase	family	Conserved region in glutamate synthase	15	430
PF01650	Peptidase_C13	family	Peptidase C13 family	24	467
PF01656	CbiA	domain	CobQ/CobB/MinD/ParA nucleotide binding domain	80	372
PF01661	A1pp	domain	Appr-1-p processing enzyme family	20	130
PF01670	Glyco_hydro_12	family	Glycosyl hydrolase family 12	12	180
PF01680	SOR_SNZ	family	SOR/SNZ family	10	227
PF01687	FAD_Synth	domain	Riboflavin kinase / FAD synthetase	18	148
PF01702	TGT	family	Queuine tRNA-ribosyltransferase	13	256
PF01712	dNK	family	Deoxynucleoside kinase	14	174
PF01719	Rep_2	family	Plasmid replication protein	13	240
PF01722	BolA	family	BolA-like protein	14	88
PF01724	DUF29	family	Domain of unknown function DUF29	14	147
PF01726	LexA_DNA_bind	domain	LexA DNA binding domain	9	65
PF01729	QRPTase_C	domain	Quinolinate phosphoribosyl transferase, C-terminal domain	19	214
PF01730	UreF	family	UreF	13	163
PF01743	PolyA_pol	domain	Poly A polymerase family	23	190
PF01745	IPT	family	Isopentenyl transferase	7	240
PF01747	ATP-sulfurylase	family	ATP-sulfurylase	19	397
PF01751	Toprim	family	Toprim domain	119	212
PF01756	ACOX	family	Acyl-CoA oxidase	44	205
PF01761	DHQ_synthase	domain	3-dehydroquinate synthase	115	494
PF01776	Ribosomal_L22e	family	Ribosomal L22e protein family	5	117
PF01791	DeoC	domain	Deoxyribose-phosphate aldolase	22	329
PF01796	DUF35	domain	Domain of unknown function DUF35	54	164
PF01797	Transposase_17	family	Transposase IS200 like	10	128
PF01798	Nop	family	Putative snoRNA binding domain	16	157
PF01799	Fer2_2	domain	[2Fe-2S] binding domain	27	95
PF01809	DUF37	family	Domain of unknown function DUF37	15	68
PF01816	LRV	repeat	Leucine rich repeat variant	59	28
PF01817	CM_2	domain	Chorismate mutase type II	105	93
PF01820	Dala_Dala_lig_N	family	D-ala D-ala ligase N-terminus	18	145
PF01837	DUF39	family	Domain of unknown function DUF39	6	337
PF01841	Transglut_core	family	Transglutaminase-like superfamily	38	95
PF01842	ACT	domain	ACT domain	207	98
PF01850	PIN	domain	PIN domain	146	216
PF01851	PC_rep	repeat	Proteasome/cyclosome repeat	162	43
PF01852	START	domain	START domain	22	262
PF01855	POR_N	family	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain	32	258
PF01861	DUF43	family	Protein of unknown function DUF43	6	380
PF01871	AMMECR1	family	AMMECR1	6	192
PF01872	RibD_C	family	RibD C-terminal domain	27	257
PF01883	DUF59	family	Domain of unknown function DUF59	20	88
PF01884	PcrB	family	PcrB family	6	251
PF01887	DUF62	family	Protein of unknown function DUF62	5	279
PF01903	CbiX	family	CbiX	76	176
PF01904	DUF72	family	Protein of unknown function DUF72	44	345
PF01910	DUF77	domain	Domain of unknown function DUF77	11	99
PF01915	Glyco_hydro_3_C	family	Glycosyl hydrolase family 3 C terminal domain	113	613
PF01921	tRNA-synt_1f	family	tRNA synthetases class I (K)	8	566
PF01923	Cob_adeno_trans	family	Cobalamin adenosyltransferase	38	210
PF01926	MMR_HSR1	family	GTPase of unknown function	797	369
PF01946	Thi4	family	Thi4 family	8	270
PF01948	PyrI	domain	Aspartate carbamoyltransferase regulatory chain, allosteric domain	9	105
PF01958	DUF108	family	Domain of unknown function DUF108	17	117
PF01959	DHQS	family	3-dehydroquinate synthase (EC 4.6.1.3)	9	417
PF01965	DJ-1_PfpI	family	DJ-1/PfpI family	44	221
PF01972	DUF114	family	Protein of unknown function DUF114	4	289
PF01975	SurE	family	Survival protein SurE	12	213
PF01976	DUF116	family	Protein of unknown function DUF116	5	179
PF01978	TrmB	family	Sugar-specific transcriptional regulator TrmB	55	149
PF01979	Amidohydro_1	domain	Amidohydrolase family	65	549
PF01984	dsDNA_bind	family	Double-stranded DNA-binding domain	6	111
PF01990	ATP-synt_F	family	ATP synthase (F/14-kDa) subunit	14	121
PF01993	MTD	family	methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase	4	281
PF01994	DUF127	family	Protein of unknown function DUF127	4	179
PF01996	DUF129	family	Protein of unknown function DUF129	7	287
PF02002	TFIIE_alpha	family	TFIIE alpha subunit	7	180
PF02006	DUF137	family	Protein of unknown function DUF137	4	193
PF02016	Peptidase_U61	family	LD-carboxypeptidase	24	75
PF02028	BCCT	family	BCCT family transporter	6	499
PF02038	ATP1G1_PLM_MAT8	family	ATP1G1/PLM/MAT8 family	8	57
PF02041	Auxin_BP	family	Auxin binding protein	4	170
PF02042	RWP-RK	family	RWP-RK domain	3	65
PF02049	FliE	family	Flagellar hook-basal body complex protein FliE	15	106
PF02066	Metallothio_11	family	Metallothionein family 11	2	56
PF02071	NSF	repeat	Aromatic-di-Alanine (AdAR) repeat	59	12
PF02072	Orexin	family	Prepro-orexin	2	131
PF02075	RuvC	domain	Crossover junction endodeoxyribonuclease RuvC	10	152
PF02082	Rrf2	family	Transcriptional regulator	130	160
PF02092	tRNA_synt_2f	family	Glycyl-tRNA synthetase beta subunit	9	595
PF02099	Josephin	family	Josephin	4	205
PF02107	FlgH	family	Flagellar L-ring protein	8	234
PF02110	HK	domain	Hydroxyethylthiazole kinase family	9	282
PF02119	FlgI	family	Flagellar P-ring protein	9	352
PF02130	UPF0054	family	Uncharacterized protein family UPF0054	6	113
PF02142	MGS	domain	MGS-like domain	164	135
PF02151	UVR	family	UvrB/uvrC motif	50	36
PF02152	FolB	domain	Dihydroneopterin aldolase	18	118
PF02153	PDH	family	Prephenate dehydrogenase	10	292
PF02183	HALZ	family	Homeobox associated leucine zipper	28	45
PF02201	SWIB	domain	SWIB/MDM2 domain	42	83
PF02209	VHP	domain	Villin headpiece domain	15	36
PF02216	B	domain	B domain	5	54
PF02221	E1_DerP2_DerF2	domain	ML domain	34	171
PF02223	Thymidylate_kin	domain	Thymidylate kinase	26	209
PF02224	Cytidylate_kin	family	Cytidylate kinase	14	164
PF02225	PA	family	PA domain	144	151
PF02228	Gag_p19	family	Major core protein p19	3	92
PF02237	BPL_C	domain	Biotin protein ligase C terminal domain	51	65
PF02246	B1	domain	Protein L b1 domain	3	71
PF02248	Como_SCP	domain	Small coat protein	11	186
PF02252	PA28_beta	family	Proteasome activator pa28 beta subunit	4	150
PF02254	TrkA_N	domain	TrkA-N domain	227	207
PF02255	PTS_IIA	domain	PTS system, Lactose/Cellobiose specific IIA subunit	10	97
PF02260	FATC	family	FATC domain	14	33
PF02289	MCH	domain	Cyclohydrolase (MCH)	6	322
PF02295	z-alpha	domain	Adenosine deaminase z-alpha domain	8	67
PF02310	B12-binding	domain	B12 binding domain	64	187
PF02317	Octopine_DH	family	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	7	195
PF02342	TerD	family	Bacterial stress protein	21	187
PF02345	TIL_assoc	family	TILa domain	20	56
PF02347	GDC-P	family	Glycine cleavage system P-protein	13	468
PF02357	NusG	family	Transcription termination factor nusG	14	45
PF02367	UPF0079	family	Uncharacterised P-loop hydrolase UPF0079	15	146
PF02374	ArsA_ATPase	family	Anion-transporting ATPase	11	344
PF02375	JmjN	family	jmjN domain	11	55
PF02390	Methyltransf_4	family	Putative methyltransferase	19	294
PF02397	Bac_transf	family	Bacterial sugar transferase	4	198
PF02407	Viral_Rep	family	Putative viral replication protein	20	93
PF02410	DUF143	family	Domain of unknown function DUF143	14	108
PF02423	OCD_Mu_crystall	family	Ornithine cyclodeaminase/mu-crystallin family	11	348
PF02432	Fimbrial_K88	family	Fimbrial, major and minor subunit	13	269
PF02441	Flavoprotein	family	Flavoprotein	42	223
PF02457	DUF147	family	Domain of unknown function DUF147	15	135
PF02470	MCE	family	mce related protein	126	217
PF02475	Met_10	family	Met-10+ like-protein	12	271
PF02476	US2	family	US2 family	7	171
PF02481	SMF	family	SMF family	12	224
PF02486	Rep_trans	family	Replication initiation factor	21	271
PF02492	cobW	domain	CobW/HypB/UreG, nucleotide-binding domain	64	289
PF02494	HYR	domain	HYR domain	19	87
PF02502	LacAB_rpiB	family	Ribose/Galactose Isomerase	12	83
PF02505	MCR_D	family	Methyl-coenzyme M reductase operon protein D	10	160
PF02518	HATPase_c	domain	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	669	341
PF02522	Antibiotic_NAT	family	Aminoglycoside 3-N-acetyltransferase	11	257
PF02525	Flavodoxin_2	domain	Flavodoxin-like fold	43	247
PF02530	Porin_2	family	Porin subfamily	3	392
PF02536	mTERF	family	mTERF	16	382
PF02540	NAD_synthase	domain	NAD synthase	14	383
PF02541	Ppx-GppA	family	Ppx/GppA phosphatase family	10	326
PF02542	YgbB	family	YgbB family	12	171
PF02547	Queuosine_synth	family	Queuosine biosynthesis protein	7	279
PF02548	Pantoate_transf	family	Ketopantoate hydroxymethyltransferase	8	268
PF02553	CbiN	family	Cobalt transport protein component CbiN	12	77
PF02558	ApbA	family	Ketopantoate reductase PanE/ApbA	100	216
PF02562	PhoH	family	PhoH-like protein	6	207
PF02570	CbiC	family	Precorrin-8X methylmutase	7	224
PF02575	DUF149	family	Uncharacterised BCR, YbaB family COG0718	30	97
PF02578	DUF152	family	Uncharacterised ACR, YfiH family COG1496	10	267
PF02581	TMP-TENI	family	Thiamine monophosphate synthase/TENI	93	281
PF02585	PIG-L	family	GlcNAc-PI de-N-acetylase	96	268
PF02589	DUF162	family	Uncharacterized ACR, YkgG family COG1556	4	141
PF02594	DUF167	family	Uncharacterized ACR, YggU family COG1872	29	82
PF02596	DUF169	family	Uncharacterized ArCR, COG2043	9	238
PF02597	ThiS	family	ThiS family	150	106
PF02602	HEM4	family	Uroporphyrinogen-III synthase HemD	13	266
PF02606	LpxK	family	Tetraacyldisaccharide-1-P 4'-kinase	7	361
PF02609	Exonuc_VII_S	family	Exonuclease VII small subunit	20	65
PF02615	Ldh_2	family	Malate/L-lactate dehydrogenase	8	348
PF02627	CMD	family	Carboxymuconolactone decarboxylase family	219	104
PF02629	CoA_binding	domain	CoA binding domain	65	127
PF02630	SCO1-SenC	family	SCO1/SenC	6	188
PF02637	GatB_Yqey	domain	GatB/Yqey domain	149	208
PF02639	DUF188	family	Uncharacterized BCR, YaiI/YqxD family COG1671	4	146
PF02650	DUF199	domain	Uncharacterized BCR, COG1481	4	313
PF02654	CobS	family	Cobalamin-5-phosphate synthase	8	250
PF02662	FlpD	family	Methyl-viologen-reducing hydrogenase, delta subunit	6	127
PF02663	FwdE	domain	Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE	5	210
PF02670	DXP_reductoisom	family	1-deoxy-D-xylulose 5-phosphate reductoisomerase	87	173
PF02679	ComA	family	(2R)-phospho-3-sulfolactate synthase (ComA)	7	280
PF02680	DUF211	family	Uncharacterized ArCR, COG1888	4	95
PF02702	KdpD	family	Osmosensitive K+ channel His kinase sensor domain	24	210
PF02720	DUF222	family	Domain of unknown function DUF222	9	224
PF02737	3HCDH_N	domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	77	213
PF02739	5_3_exonuc_N	domain	5'-3' exonuclease, N-terminal resolvase-like domain	27	197
PF02741	FTR_C	domain	FTR, proximal lobe	9	158
PF02742	Fe_dep_repr_C	domain	Iron dependent repressor, metal binding and dimerisation domain	10	73
PF02749	QRPTase_N	domain	Quinolinate phosphoribosyl transferase, N-terminal domain	19	98
PF02753	Pili_assembly_C	family	Gram-negative pili assembly chaperone, C-terminal domain	19	107
PF02767	DNA_pol3_beta_2	domain	DNA polymerase III beta subunit, central domain	15	130
PF02771	Acyl-CoA_dh_N	domain	Acyl-CoA dehydrogenase, N-terminal domain	10	130
PF02773	S-AdoMet_synt_C	domain	S-adenosylmethionine synthetase, C-terminal domain	12	145
PF02775	TPP_enzyme_C	domain	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	338	250
PF02776	TPP_enzyme_N	domain	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	21	183
PF02785	Biotin_carb_C	domain	Biotin carboxylase C-terminal domain	61	131
PF02787	CPSase_L_D3	domain	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	44	156
PF02796	HTH_7	domain	Helix-turn-helix domain of resolvase	14	54
PF02801	Ketoacyl-synt_C	domain	Beta-ketoacyl synthase, C-terminal domain	171	205
PF02803	Thiolase_C	domain	Thiolase, C-terminal domain	24	156
PF02812	ELFV_dehydrog_N	domain	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	16	137
PF02817	E3_binding	family	e3 binding domain	61	43
PF02820	MBT	family	mbt repeat	21	81
PF02823	ATP-synt_DE_N	domain	ATP synthase, Delta/Epsilon chain, beta-sandwich domain	20	93
PF02826	2-Hacid_dh_C	domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	173	254
PF02829	3H	family	3H domain	6	106
PF02843	GARS_C	domain	Phosphoribosylglycinamide synthetase, C domain	18	100
PF02844	GARS_N	domain	Phosphoribosylglycinamide synthetase, N domain	19	112
PF02852	Pyr_redox_dim	domain	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	104	141
PF02863	Arg_repressor_C	domain	Arginine repressor, C-terminal domain	51	74
PF02866	Ldh_1_C	domain	lactate/malate dehydrogenase, alpha/beta C-terminal domain	30	211
PF02868	Peptidase_M4_C	domain	Thermolysin metallopeptidase, alpha-helical domain	13	182
PF02879	PGM_PMM_II	domain	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II	16	124
PF02881	SRP54_N	domain	SRP54-type protein, helical bundle domain	55	92
PF02882	THF_DHG_CYH_C	domain	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	92	205
PF02884	Lyase_8_C	domain	Polysaccharide lyase family 8, C-terminal beta-sandwich domain	5	84
PF02885	Glycos_trans_3N	domain	Glycosyl transferase family, helical bundle domain	25	80
PF02897	Peptidase_S9_N	domain	Prolyl oligopeptidase, N-terminal beta-propeller domain	31	521
PF02906	Fe_hyd_lg_C	domain	Iron only hydrogenase large subunit, C-terminal domain	18	347
PF02909	TetR_C	domain	Tetracyclin repressor, C-terminal all-alpha domain	18	160
PF02910	Succ_DH_flav_C	domain	Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain	38	169
PF02912	Phe_tRNA-synt_N	domain	Aminoacyl tRNA synthetase class II, N-terminal domain	53	74
PF02913	FAD-oxidase_C	domain	FAD linked oxidases, C-terminal domain	73	329
PF02918	Pertussis_S2S3	domain	Pertussis toxin, subunit 2 and 3, C-terminal domain	2	109
PF02921	UCR_TM	family	Ubiquinol cytochrome reductase transmembrane region	5	75
PF02922	Isoamylase_N	domain	Isoamylase N-terminal domain	60	135
PF02941	FeThRed_A	domain	Ferredoxin thioredoxin reductase variable alpha chain	4	77
PF02946	GTF2I	family	GTF2I-like repeat	11	76
PF02951	GSH-S_N	domain	Prokaryotic glutathione synthetase, N-terminal domain	5	128
PF02954	HTH_8	domain	Bacterial regulatory protein, Fis family	96	48
PF02966	DIM1	domain	Mitosis protein DIM1	4	145
PF02983	Pro_Al_protease	domain	Alpha-lytic protease prodomain	20	70
PF02987	LEA_4	family	Late embryogenesis abundant protein	90	80
PF03007	UPF0089	family	Uncharacterised protein family (UPF0089)	16	309
PF03009	GDPD	family	Glycerophosphoryl diester phosphodiesterase family	38	445
PF03031	NIF	family	NLI interacting factor-like phosphatase	15	221
PF03033	Glyco_transf_28	family	Glycosyltransferase family 28 N-terminal domain	43	190
PF03049	Herpes_UL79	family	UL79 family	9	271
PF03060	NPD	family	2-nitropropane dioxygenase	12	445
PF03067	Chitin_bind_3	domain	Chitin binding domain	26	270
PF03069	FmdA_AmdA	family	Acetamidase/Formamidase family	8	417
PF03102	NeuB	family	NeuB family	12	281
PF03109	ABC1	family	ABC1 family	34	160
PF03114	BAR	domain	BAR domain	29	277
PF03118	RNA_pol_A_CTD	domain	Bacterial RNA polymerase, alpha chain C terminal domain	14	68
PF03129	HGTP_anticodon	domain	Anticodon binding domain	117	141
PF03130	HEAT_PBS	repeat	PBS lyase HEAT-like repeat	224	40
PF03147	FDX-ACB	domain	Ferredoxin-fold anticodon binding domain	19	101
PF03180	Lipoprotein_9	family	NLPA lipoprotein	40	273
PF03192	DUF257	family	Pyrococcus protein of unknown function, DUF257	16	219
PF03205	MobB	family	Molybdopterin guanine dinucleotide synthesis protein B	13	159
PF03212	Pertactin	family	Pertactin	8	142
PF03229	Alpha_GJ	family	Alphavirus glycoprotein J	5	130
PF03241	HpaB	family	4-hydroxyphenylacetate 3-hydroxylase family	11	401
PF03243	MerB	family	Alkylmercury lyase	6	210
PF03255	ACCA	family	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	15	149
PF03259	Robl_LC7	domain	Roadblock/LC7 domain	46	102
PF03266	DUF265	family	Protein of unknown function, DUF265	9	157
PF03270	DUF269	family	Protein of unknown function, DUF269	10	148
PF03271	EB1	family	EB1-like C-terminal motif	13	74
PF03297	Ribosomal_S25	family	S25 ribosomal protein	7	113
PF03313	SDH_alpha	family	Serine dehydratase alpha chain	9	289
PF03315	SDH_beta	family	Serine dehydratase beta chain	9	160
PF03320	FBPase_glpX	family	Bacterial fructose-1,6-bisphosphatase, glpX-encoded	6	335
PF03328	HpcH_HpaI	family	HpcH/HpaI aldolase/citrate lyase family	22	267
PF03330	DPBB_1	domain	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	150	140
PF03358	FMN_red	family	NADPH-dependent FMN reductase	21	210
PF03364	Polyketide_cyc	family	Streptomyces cyclase/dehydrase	106	266
PF03411	Peptidase_U6	family	Penicillin-insensitive murein endopeptidase	3	249
PF03420	Peptidase_U9	family	Prohead core protein protease	2	221
PF03435	Saccharop_dh	family	Saccharopine dehydrogenase	55	513
PF03436	DUF281	family	Domain of unknown function (DUF281)	6	76
PF03437	BtpA	family	BtpA family	7	282
PF03445	DUF294	family	Putative nucleotidyltransferase DUF294	5	333
PF03446	NAD_binding_2	domain	NAD binding domain of 6-phosphogluconate dehydrogenase	185	238
PF03447	NAD_binding_3	domain	Homoserine dehydrogenase, NAD binding domain	31	143
PF03449	GreA_GreB_N	domain	Prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain	8	75
PF03451	HELP	family	HELP motif	7	78
PF03453	MoeA_N	family	MoeA N-terminal region (domain I and II)	58	213
PF03457	HA	domain	Helicase associated domain	44	93
PF03466	LysR_substrate	family	LysR substrate binding domain	435	318
PF03472	Autoind_bind	domain	Autoinducer binding domain	45	168
PF03473	MOSC	domain	MOSC domain	33	221
PF03475	3-alpha	domain	3-alpha domain	11	52
PF03481	SUA5	domain	SUA5 domain	20	179
PF03483	B3_4	domain	B3/4 domain	96	276
PF03484	B5	domain	tRNA synthetase B5 domain	59	100
PF03486	HI0933_like	family	HI0933-like protein	49	447
PF03500	Cellsynth_D	family	Cellulose synthase subunit D	2	144
PF03501	S10_plectin	domain	Plectin/S10 domain	12	99
PF03507	CagA	family	CagA exotoxin	4	195
PF03512	Glyco_hydro_52	family	Glycosyl hydrolase family 52	4	430
PF03533	SPO11_like	family	SPO11 homologue	2	43
PF03537	DUF297	family	TM1410 hypothetical-related protein	3	246
PF03551	PadR	family	Transcriptional regulator PadR-like family	33	95
PF03559	Hexose_dehydrat	family	NDP-hexose 2,3-dehydratase	27	225
PF03572	Peptidase_S41	family	Peptidase family S41	148	300
PF03576	Peptidase_S58	family	Peptidase family T4	4	371
PF03582	Herpes_UL34	family	Herpesvirus UL34-like protein	6	248
PF03584	Herpes_ICP4_N	family	Herpesvirus ICP4-like protein N-terminal region	13	178
PF03585	Herpes_ICP4_C	family	Herpesvirus ICP4-like protein C-terminal region	11	471
PF03589	Antiterm	domain	Antitermination protein	4	99
PF03609	EII-Sor	family	PTS system sorbose-specific iic component	17	244
PF03610	EIIA-man	family	PTS system fructose IIA component	36	130
PF03612	EIIBC-GUT_N	family	Sorbitol phosphotransferase enzyme II N-terminus	12	190
PF03625	DUF302	domain	Domain of unknown function DUF302	16	125
PF03641	Lysine_decarbox	family	Possible lysine decarboxylase	34	180
PF03646	FlaG	family	FlaG protein	15	123
PF03652	UPF0081	family	Uncharacterised protein family (UPF0081)	16	142
PF03671	UPF0185	family	Uncharacterised protein family (UPF0185)	2	76
PF03672	UPF0154	family	Uncharacterised protein family (UPF0154)	5	64
PF03681	UPF0150	domain	Uncharacterised protein family (UPF0150)	66	54
PF03686	UPF0146	domain	Uncharacterised protein family (UPF0146)	6	135
PF03698	UPF0180	family	Uncharacterised protein family (UPF0180)	3	85
PF03702	UPF0075	family	Uncharacterised protein family (UPF0075)	9	385
PF03710	GlnE	domain	Glutamate-ammonia ligase adenylyltransferase	22	243
PF03711	OKR_DC_1_C	domain	Orn/Lys/Arg decarboxylase, C-terminal domain	9	138
PF03714	PUD	domain	Bacterial pullanase-associated domain	19	125
PF03720	UDPG_MGDP_dh_C	domain	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	25	129
PF03721	UDPG_MGDP_dh_N	domain	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	27	216
PF03726	PNPase	domain	Polyribonucleotide nucleotidyltransferase, RNA binding domain	25	90
PF03727	Hexokinase_2	domain	Hexokinase	15	266
PF03737	Methyltransf_6	family	Demethylmenaquinone methyltransferase	11	186
PF03740	PdxJ	family	Pyridoxal phosphate biosynthesis protein PdxJ	9	276
PF03746	LamB_YcsF	family	LamB/YcsF family	16	256
PF03755	YicC_N	family	YicC-like family, N-terminal region	14	163
PF03756	AfsA	repeat	A-factor biosynthesis repeat	9	86
PF03775	MinC_C	domain	Septum formation inhibitor MinC, C-terminal domain	15	114
PF03786	UxuA	family	D-mannonate dehydratase (UxuA)	10	408
PF03793	PASTA	domain	PASTA domain	242	104
PF03795	YCII	domain	YCII-related domain	21	90
PF03807	F420_oxidored	family	NADP oxidoreductase coenzyme F420-dependent	61	341
PF03808	Glyco_tran_WecB	family	Glycosyl transferase WecB/TagA/CpsF family	18	181
PF03816	LytR_cpsA_psr	family	Cell envelope-related transcriptional attenuator domain	39	248
PF03841	SelA	family	L-seryl-tRNA selenium transferase	13	384
PF03846	SulA	family	Cell division inhibitor SulA	4	119
PF03852	Vsr	family	DNA mismatch endonuclease Vsr	7	84
PF03853	YjeF_N	family	YjeF-related protein N-terminus	33	199
PF03860	DUF326	repeat	Domain of Unknown Function (DUF326)	23	27
PF03869	Arc	family	Arc-like DNA binding domain	3	50
PF03895	YadA	family	YadA-like C-terminal region	12	83
PF03903	Phage_T4_gp36	family	Phage T4 tail fibre	3	234
PF03912	PsbW	family	Photosystem II reaction centre W protein, PsbW	3	114
PF03918	CcmH	family	Cytochrome C biogenesis protein	7	158
PF03923	Lipoprotein_16	family	Uncharacterized lipoprotein	2	207
PF03925	SeqA	family	SeqA protein	4	204
PF03928	DUF336	family	Domain of unknown function (DUF336)	37	154
PF03932	CutC	family	CutC family	8	211
PF03936	Terpene_synth_C	domain	Terpene synthase family, metal binding domain	87	355
PF03949	Malic_M	domain	Malic enzyme, NAD binding domain	69	324
PF03950	tRNA-synt_1c_C	domain	tRNA synthetases class I (E and Q), anti-codon binding domain	32	250
PF03952	Enolase_N	domain	Enolase, N-terminal domain	12	140
PF03955	Adeno_PIX	family	Adenovirus hexon-associated protein (IX)	11	114
PF03965	Pencillinase_R	family	Penicillinase repressor	50	127
PF03980	Nnf1	family	Nnf1	2	157
PF03993	DUF349	domain	Domain of Unknown Function (DUF349)	4	82
PF04003	Utp12	family	Dip2/Utp12 Family	8	269
PF04016	DUF364	family	Domain of unknown function (DUF364)	4	259
PF04028	DUF374	family	Domain of unknown function (DUF374)	7	87
PF04029	2-ph_phosp	family	2-phosphosulpholactate phosphatase	10	250
PF04032	Rpr2	family	RNAse P Rpr2/Rpp21 subunit domain	13	118
PF04036	DUF372	family	Domain of unknown function (DUF372)	4	51
PF04042	DNA_pol_E_B	family	DNA polymerase epsilon subunit B	9	435
PF04071	zf-like	family	Cysteine-rich small domain	4	93
PF04072	LCM	family	Leucine carboxyl methyltransferase	8	330
PF04075	DUF385	family	Domain of unknown function (DUF385)	10	150
PF04082	Fungal_trans	domain	Fungal specific transcription factor domain	70	120
PF04089	BRICHOS	domain	BRICHOS domain	16	109
PF04096	Nucleoporin2	family	Nucleoporin autopeptidase	3	188
PF04107	GCS2	family	Glutamate-cysteine ligase family 2(GCS2)	12	328
PF04126	DUF369	family	Domain of unknown function (DUF369)	3	125
PF04127	DFP	family	DNA / pantothenate metabolism flavoprotein	19	359
PF04131	NanE	family	Putative N-acetylmannosamine-6-phosphate epimerase	7	201
PF04136	Sec34	family	Sec34-like family	4	166
PF04145	Ctr	family	Ctr copper transporter family	23	293
PF04149	DUF397	domain	Domain of unknown function (DUF397)	23	80
PF04164	DUF400	family	Protein of unknown function, DUF400	4	103
PF04169	DUF404	family	Domain of unknown function (DUF404)	11	313
PF04174	DUF407	family	Domain of unknown function (DUF407)	13	162
PF04198	Sugar-bind	domain	Putative sugar-binding domain	31	281
PF04204	HTS	family	Homoserine O-succinyltransferase	26	346
PF04207	MtrD	family	Tetrahydromethanopterin S-methyltransferase, subunit D	4	237
PF04212	MIT	domain	MIT domain	32	30
PF04214	DUF411	family	Protein of unknown function, DUF	7	99
PF04216	FdhE	family	Protein involved in formate dehydrogenase formation	5	308
PF04218	CENP-B_N	domain	CENP-B N-terminal DNA-binding domain	8	55
PF04219	DUF413	family	Protein of unknown function, DUF	2	114
PF04227	Indigoidine_A	family	Indigoidine synthase A like protein	10	329
PF04230	PS_pyruv_trans	family	Polysaccharide pyruvyl transferase	23	450
PF04239	DUF421	family	Protein of unknown function (DUF421)	23	129
PF04242	DUF424	family	Protein of unknown function (DUF424)	7	96
PF04256	DUF434	family	Protein of unknown function (DUF434)	5	58
PF04263	TPK_catalytic	domain	Thiamin pyrophosphokinase, catalytic domain	16	187
PF04268	SoxG	family	Sarcosine oxidase, gamma subunit family	6	160
PF04273	DUF442	domain	Protein of unknown function (DUF442)	6	111
PF04276	DUF443	family	Protein of unknown function (DUF443)	5	214
PF04282	DUF438	family	Family of unknown function (DUF438)	11	88
PF04306	DUF456	family	Protein of unknown function (DUF456)	5	144
PF04309	G3P_antiterm	family	Glycerol-3-phosphate responsive antiterminator	8	192
PF04319	NifZ	domain	NifZ domain	9	77
PF04321	RmlD_sub_bind	domain	RmlD substrate binding domain	38	357
PF04322	DUF473	family	Protein of unknown function (DUF473)	3	119
PF04327	DUF464	family	Protein of unknown function (DUF464)	13	128
PF04333	VacJ	family	VacJ like lipoprotein	12	213
PF04341	DUF485	family	Protein of unknown function, DUF485	9	110
PF04361	DUF494	family	Protein of unknown function (DUF494)	5	160
PF04363	DUF496	family	Protein of unknown function (DUF496)	5	95
PF04368	DUF507	family	Protein of unknown function (DUF507)	3	183
PF04378	DUF519	family	Protein of unknown function (DUF519)	9	268
PF04380	DUF526	family	Protein of unknown function (DUF526)	6	96
PF04386	SspB	family	Stringent starvation protein B	8	163
PF04389	Peptidase_M28	family	Peptidase family M28	77	357
PF04391	DUF533	family	Protein of unknown function (DUF533)	6	209
PF04392	DUF534	family	Protein of unknown function (DUF534)	9	303
PF04397	LytTR	domain	LytTr DNA-binding domain	124	120
PF04413	Glycos_transf_N	family	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)	19	203
PF04417	DUF501	family	Protein of unknown function (DUF501)	4	154
PF04421	Mss4	domain	Mss4 protein	5	116
PF04422	FrhB_FdhB_N	family	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N terminus	22	85
PF04430	DUF498	domain	Protein of unknown function (DUF498)	6	125
PF04431	Pec_lyase_N	family	Pectate lyase, N terminus	8	80
PF04434	SWIM	domain	SWIM zinc finger	93	61
PF04452	DUF558	family	Protein of unknown function (DUF558)	109	269
PF04454	Linocin_M18	family	Linocin_M18 bacteriocin protein	5	279
PF04459	DUF512	family	Protein of unknown function (DUF512)	6	250
PF04463	DUF523	family	Protein of unknown function (DUF523)	13	152
PF04475	DUF555	family	Protein of unknown function (DUF555)	6	103
PF04476	DUF556	family	Protein of unknown function (DUF556)	4	238
PF04481	DUF561	family	Protein of unknown function (DUF561)	5	258
PF04488	Gly_transf_sug	family	Glycosyltransferase sugar-binding region containing DXD motif	31	99
PF04508	Pox_A_type_inc	repeat	Viral A-type inclusion protein repeat	27	23
PF04531	Phage_holin_1	family	Bacteriophage holin	8	85
PF04548	AIG1	family	AIG1 family	32	259
PF04550	Phage_holin_2	family	Phage holin family 2	2	90
PF04551	GcpE	family	GcpE protein	12	400
PF04566	RNA_pol_Rpb2_4	domain	RNA polymerase Rpb2, domain 4	12	65
PF04576	DUF593	family	Protein of unknown function, DUF593	16	94
PF04593	SelP_C	family	Selenoprotein P, C terminal region	5	145
PF04600	DUF571	family	Protein of unknown function (DUF571)	9	524
PF04604	L_biotic_typeA	family	Type-A lantibiotic	9	49
PF04612	GspM	family	General secretion pathway, M protein	13	177
PF04613	LpxD	family	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD	18	110
PF04643	Motilin_assoc	family	Motilin/ghrelin-associated peptide	10	64
PF04655	APH_6_hur	family	Aminoglycoside/hydroxyurea antibiotic resistance kinase	9	271
PF04657	DUF606	family	Protein of unknown function, DUF606	10	145
PF04705	TSNR_N	family	Thiostrepton-resistance methylase, N terminus	2	115
PF04715	Anth_synt_I_N	family	Anthranilate synthase component I, N terminal region	67	266
PF04722	Ssu72	family	Ssu72-like protein	6	203
PF04723	GRDA	family	Glycine reductase complex selenoprotein A	3	150
PF04732	Filament_head	family	Intermediate filament head (DNA binding) region	34	142
PF04751	DUF615	family	Protein of unknown function (DUF615)	6	182
PF04752	ChaC	family	ChaC-like protein	15	266
PF04755	PAP_fibrillin	family	PAP_fibrillin	13	271
PF04760	IF2_N	family	Translation initiation factor IF-2, N-terminal region	61	65
PF04775	Bile_Hydr_Trans	family	Acyl-CoA thioester hydrolase / Bile acid-CoA amino acid N-acetyltransferase	9	157
PF04776	DUF626	family	Protein of unknown function (DUF626)	21	154
PF04783	DUF630	family	Protein of unknown function (DUF630)	12	61
PF04787	Pox_H7	family	Late protein H7	5	151
PF04794	YdjC	family	YdjC-like protein	9	318
PF04802	DUF625	family	Protein of unknown function (DUF625)	7	210
PF04806	EspF	repeat	EspF protein	2	185
PF04820	Trp_halogenase	family	Tryptophan halogenase	23	539
PF04822	DUF622	family	Protein of unknown function, DUF622	7	92
PF04828	DUF636	family	Protein of unknown function (DUF636)	55	112
PF04837	MbeB_N	family	MbeB-like, N-term conserved region	9	52
PF04855	SNF5	family	SNF5 / SMARCB1 / INI1	8	322
PF04859	DUF641	family	Plant protein of unknown function (DUF641)	8	143
PF04864	Alliinase_C	domain	Allinase	10	381
PF04865	Baseplate_J	family	Baseplate J-like protein	31	390
PF04867	DUF643	family	Protein of unknown function (DUF643)	3	118
PF04882	Peroxin-3	family	Peroxin-3	7	544
PF04883	DUF646	family	Bacteriophage protein of unknown function (DUF646)	5	173
PF04899	MbeD_MobD	family	MbeD/MobD like	6	77
PF04900	DUF652	family	Protein of unknown function, DUF652	10	103
PF04909	Amidohydro_2	domain	Amidohydrolase	140	730
PF04911	ATP-synt_J	family	ATP synthase j chain	2	59
PF04914	DltD_C	family	DltD C-terminal region	9	131
PF04919	DUF655	family	Protein of unknown function, DUF655	8	278
PF04924	Pox_A6	family	Poxvirus A6 protein	5	372
PF04942	CC	domain	CC domain	20	38
PF04944	DUF661	family	Uncharacterised BCR (COG3801)	4	137
PF04953	CitD	family	Citrate lyase, gamma subunit	8	97
PF04954	SIP	family	Siderophore-interacting protein	37	173
PF04967	HTH_10	domain	HTH DNA binding domain	30	53
PF04977	DivIC	family	Septum formation initiator	75	83
PF04978	DUF664	family	Protein of unknown function (DUF664)	9	166
PF04994	TfoX_C	domain	TfoX C-terminal domain	6	82
PF05003	DUF668	family	Protein of unknown function (DUF668)	7	93
PF05004	IFRD	family	Interferon-related developmental regulator (IFRD)	7	360
PF05011	DBR1	domain	Lariat debranching enzyme, C-terminal domain	5	163
PF05013	FGase	family	N-formylglutamate amidohydrolase	16	257
PF05014	Nuc_deoxyrib_tr	family	Nucleoside 2-deoxyribosyltransferase	11	185
PF05019	Coq4	family	Coenzyme Q (ubiquinone) biosynthesis protein Coq4	5	220
PF05025	RbsD_FucU	family	RbsD / FucU transport protein family	16	153
PF05030	SSXT	family	SSXT protein (N-terminal region)	4	78
PF05034	MAAL_N	family	Methylaspartate ammonia-lyase N-terminus	4	160
PF05035	DGOK	family	2-keto-3-deoxy-galactonokinase	3	298
PF05036	SPOR	domain	Sporulation related repeat	65	37
PF05043	Mga	domain	M protein trans-acting positive regulator (MGA)	3	489
PF05055	DUF677	family	Protein of unknown function (DUF677)	7	374
PF05062	RICH	domain	RICH domain	26	94
PF05103	DivIVA	family	DivIVA protein	10	387
PF05106	Phage_holin_3	family	Phage holin family (Lysis protein S)	5	106
PF05118	Asp_Arg_Hydrox	family	Aspartyl/Asparaginyl beta-hydroxylase	14	192
PF05120	GvpG	domain	Gas vesicle protein G	3	80
PF05134	GspL	family	General secretion pathway protein L (GspL)	23	468
PF05139	Erythro_esteras	family	Erythromycin esterase	10	427
PF05152	DUF705	family	Protein of unknown function (DUF705)	8	334
PF05157	GSPII_E_N	domain	GSPII_E N-terminal domain	26	161
PF05175	MTS	domain	Methyltransferase small domain	35	200
PF05189	RTC_insert	domain	RNA 3'-terminal phosphate cyclase (RTC), insert domain	20	127
PF05198	IF3_N	domain	Translation initiation factor IF-3, N-terminal domain	39	76
PF05204	Hom_end	domain	Homing endonuclease	16	140
PF05218	DUF713	family	Protein of unknown function (DUF713)	7	195
PF05222	AlaDh_PNT_N	domain	Alanine dehydrogenase/PNT, N-terminal domain	45	144
PF05227	CHASE3	domain	CHASE3 domain	26	145
PF05231	MASE1	domain	MASE1	33	371
PF05235	CHAD	domain	CHAD domain	19	358
PF05244	Brucella_OMP2	family	Brucella outer membrane protein 2	4	240
PF05261	Tra_M	family	TraM protein	3	127
PF05267	DUF725	family	Protein of unknown function (DUF725)	9	150
PF05268	GP38	family	Phage tail fibre adhesin Gp38	6	278
PF05272	VirE	family	Virulence-associated protein E	10	223
PF05278	PEARLI-4	family	Arabidopsis phospholipase-like protein (PEARLI 4)	6	317
PF05280	FlhC	family	Flagellar transcriptional activator (FlhC)	4	187
PF05289	BLYB	family	Borrelia hemolysin accessory protein	2	106
PF05295	Luciferase	domain	Luciferase	2	673
PF05299	Peptidase_M61	family	M61 glycyl aminopeptidase	12	124
PF05316	VAR1	family	Mitochondrial ribosomal protein (VAR1)	5	415
PF05331	DUF742	family	Protein of unknown function (DUF742)	14	138
PF05335	DUF745	family	Protein of unknown function (DUF745)	9	241
PF05347	Complex1_LYR	family	Complex 1 protein (LYR family)	26	76
PF05358	DicB	family	DicB protein	3	62
PF05368	NmrA	family	NmrA-like family	26	363
PF05378	Hydant_A_N	family	Hydantoinase/oxoprolinase N-terminal region	67	262
PF05383	La	domain	La domain	36	72
PF05388	Carbpep_Y_N	family	Carboxypeptidase Y pro-peptide	4	121
PF05391	Lsm_interact	motif	Lsm interaction motif	8	22
PF05400	FliT	family	Flagellar protein FliT	4	123
PF05402	PqqD	family	Coenzyme PQQ synthesis protein D (PqqD)	8	82
PF05421	DUF751	family	Protein of unknown function (DUF751)	8	64
PF05423	Mycobact_memb	family	Mycobacterium membrane protein	7	140
PF05433	Rick_17kDa_Anti	family	Rickettsia 17 kDa surface antigen	87	52
PF05437	AzlD	family	Branched-chain amino acid transport protein (AzlD)	7	107
PF05450	Nicastrin	family	Nicastrin	6	260
PF05457	Transposase_33	family	Sulfolobus transposase	2	176
PF05479	PsaN	family	Photosystem I reaction centre subunit N (PSAN or PSI-N)	3	139
PF05512	AWPM-19	family	AWPM-19-like family	8	161
PF05524	PEP-utilisers_N	family	PEP-utilising enzyme, N-terminal	46	128
PF05543	Peptidase_C47	family	Staphopain peptidase C47	5	176
PF05544	Pro_racemase	family	Proline racemase	14	351
PF05566	Pox_vIL-18BP	family	Orthopoxvirus interleukin 18 binding protein	2	126
PF05575	V_cholerae_RfbT	family	Vibrio cholerae RfbT protein	2	286
PF05582	Peptidase_U57	family	YabG peptidase U57	7	302
PF05584	Sulfolobus_pRN	family	Sulfolobus plasmid regulatory protein	6	73
PF05591	DUF770	family	Protein of unknown function (DUF770)	14	167
PF05595	DUF771	family	Domain of unknown function (DUF771)	5	114
PF05639	DUF797	family	Protein of unknown function (DUF797)	5	72
PF05651	Diacid_rec	family	Putative sugar diacid recognition	9	310
PF05665	DUF811	family	Domain of unknown function (DUF811)	2	274
PF05667	DUF812	family	Protein of unknown function (DUF812)	4	655
PF05674	DUF816	family	Baculovirus protein of unknown function (DUF816)	7	172
PF05680	ATP-synt_E	family	ATP synthase E chain	5	89
PF05690	ThiG	family	Thiazole biosynthesis protein ThiG	28	263
PF05703	DUF828	family	Plant protein of unknown function (DUF828)	12	533
PF05711	TylF	family	Macrocin-O-methyltransferase (TylF)	8	276
PF05714	Borrelia_lipo_1	family	Borrelia burgdorferi virulent strain associated lipoprotein	6	215
PF05724	TPMT	family	Thiopurine S-methyltransferase (TPMT)	12	236
PF05726	Pirin_C	domain	Pirin C-terminal region	40	139
PF05729	NACHT	domain	NACHT domain	27	231
PF05751	FixH	family	FixH	11	160
PF05754	DUF834	domain	Domain of unknown function (DUF834)	21	72
PF05762	VWA_CoxE	family	VWA domain containing CoxE-like protein	17	309
PF05768	DUF836	domain	Glutaredoxin-like domain (DUF836)	49	151
PF05771	Pox_A31	family	Poxvirus A31 protein	3	124
PF05799	COX5C	family	Cytochrome c oxidase subunit Vc (COX5C)	6	62
PF05830	NodZ	family	Nodulation protein Z (NodZ)	6	322
PF05834	Lycopene_cycl	family	Lycopene cyclase protein	20	442
PF05845	PhnH	family	Bacterial phosphonate metabolism protein (PhnH)	11	220
PF05859	Mis12	family	Mis12 protein	4	151
PF05860	Haemagg_act	domain	haemagglutination activity domain	65	161
PF05861	PhnI	family	Bacterial phosphonate metabolism protein (PhnI)	9	396
PF05874	PBAN	family	Pheromone biosynthesis activating neuropeptide (PBAN)	3	197
PF05889	SLA_LP_auto_ag	family	Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)	5	424
PF05896	NQRA	family	Na(+)-translocating NADH-quinone reductase subunit A (NQRA)	10	469
PF05913	DUF871	family	Bacterial protein of unknown function (DUF871)	9	391
PF05931	AgrD	family	Staphylococcal AgrD protein	19	45
PF05932	CesT	family	Tir chaperone protein (CesT)	36	133
PF05940	NnrS	family	NnrS protein	14	397
PF05957	DUF883	family	Bacterial protein of unknown function (DUF883)	11	99
PF05974	DUF892	domain	Protein of unknown function (DUF892)	12	163
PF05979	DUF896	family	Bacterial protein of unknown function (DUF896)	8	66
PF05985	EutC	family	Ethanolamine ammonia-lyase light chain (EutC)	10	246
PF05988	DUF899	family	Bacterial protein of unknown function (DUF899)	12	338
PF05991	DUF901	family	Protein of unknown function (DUF901)	13	181
PF05996	Fe_bilin_red	family	Ferredoxin-dependent bilin reductase	14	243
PF06014	DUF910	family	Bacterial protein of unknown function (DUF910)	9	64
PF06015	Chordopox_A30L	family	Chordopoxvirus A30L protein	5	79
PF06026	Rib_5-P_isom_A	family	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)	59	204
PF06029	AlkA_N	domain	AlkA N-terminal domain	11	148
PF06035	DUF920	family	Bacterial protein of unknown function (DUF920)	11	190
PF06041	DUF924	family	Bacterial protein of unknown function (DUF924)	13	203
PF06051	DUF928	family	Domain of Unknown Function (DUF928)	11	245
PF06055	ExoD	family	Exopolysaccharide synthesis, ExoD	12	199
PF06066	SepZ	family	SepZ	4	100
PF06071	DUF933	domain	Protein of unknown function (DUF933)	45	88
PF06073	DUF934	family	Bacterial protein of unknown function (DUF934)	9	186
PF06078	DUF937	family	Bacterial protein of unknown function (DUF937)	7	87
PF06080	DUF938	family	Protein of unknown function (DUF938)	6	218
PF06086	Pox_A30L_A26L	family	Orthopoxvirus A26L/A30L protein	3	220
PF06089	Asparaginase_II	family	L-asparaginase II	11	346
PF06102	DUF947	family	Domain of unknown function (DUF947)	8	207
PF06106	DUF950	family	Staphylococcus protein of unknown function (DUF950)	3	112
PF06107	DUF951	family	Bacterial protein of unknown function (DUF951)	10	64
PF06108	DUF952	family	Protein of unknown function (DUF952)	10	134
PF06122	TraH	family	TraH protein	10	512
PF06140	Ifi-6-16	family	Interferon-induced 6-16 family	9	85
PF06147	DUF968	family	Protein of unknown function (DUF968)	6	259
PF06162	DUF976	family	Caenorhabditis elegans protein of unknown function (DUF976)	6	193
PF06169	DUF982	family	Protein of unknown function (DUF982)	24	80
PF06180	CbiK	family	Cobalt chelatase (CbiK)	8	302
PF06186	DUF992	family	Protein of unknown function (DUF992)	8	152
PF06188	HrpE	family	HrpE protein	6	192
PF06189	5-nucleotidase	family	5'-nucleotidase	9	288
PF06191	DUF995	family	Protein of unknown function (DUF995)	7	151
PF06192	TorD	family	Cytoplasmic chaperone TorD	24	153
PF06197	DUF998	family	Protein of unknown function (DUF998)	12	169
PF06207	DUF1002	family	Protein of unknown function (DUF1002)	13	255
PF06212	GRIM-19	family	GRIM-19 protein	3	137
PF06223	Phage_tail_T	family	Minor tail protein T	5	103
PF06224	DUF1006	family	Protein of unknown function (DUF1006)	9	405
PF06230	DUF1009	family	Protein of unknown function (DUF1009)	9	278
PF06232	ATS3	family	Embryo-specific protein 3, (ATS3)	5	140
PF06236	MelC1	family	Tyrosinase co-factor MelC1	7	164
PF06242	DUF1013	family	Protein of unknown function (DUF1013)	4	165
PF06244	DUF1014	family	Protein of unknown function (DUF1014)	8	274
PF06258	DUF1022	family	Protein of unknown function (DUF1022)	6	407
PF06259	DUF1023	family	Domain of unknown function (DUF1023)	6	197
PF06262	DUF1025	family	Domain of unknown function (DUF1025)	9	122
PF06265	DUF1027	family	Protein of unknown function (DUF1027)	10	87
PF06267	DUF1028	family	Family of unknown function (DUF1028)	6	292
PF06275	DUF1031	family	Protein of unknown function (DUF1031)	2	80
PF06287	DUF1039	family	Protein of unknown function (DUF1039)	3	92
PF06289	FlbD	family	Flagellar protein (FlbD)	10	60
PF06298	PsbY	family	Photosystem II protein Y (PsbY)	8	36
PF06299	DUF1045	family	Protein of unknown function (DUF1045)	7	232
PF06307	Herpes_IR6	family	Herpesvirus IR6 protein	3	235
PF06325	PrmA	family	Ribosomal protein L11 methyltransferase (PrmA)	31	493
PF06331	REX1	family	REX1 DNA Repair	6	72
PF06344	Parecho_VpG	domain	Parechovirus Genome-linked protein	4	20
PF06353	DUF1062	family	Protein of unknown function (DUF1062)	6	182
PF06366	FlhE	family	Flagellar protein FlhE	5	133
PF06372	Gemin6	family	Gemin6 protein	2	167
PF06405	RCC_reductase	family	Red chlorophyll catabolite reductase (RCC reductase)	4	272
PF06411	HdeA	domain	hns-dependent expression protein A (HdeA)	2	79
PF06414	Zeta_toxin	family	Zeta toxin	9	230
PF06426	SATase_N	domain	Serine acetyltransferase, N-terminal	25	107
PF06438	HasA	domain	Heme-binding protein A (HasA)	4	228
PF06461	DUF1086	domain	Domain of Unknown Function (DUF1086)	5	168
PF06470	SMC_hinge	domain	SMC proteins Flexible Hinge Domain	98	157
PF06479	Ribonuc_2-5A	family	Ribonuclease 2-5A	12	159
PF06491	DUF1094	family	Protein of unknown function (DUF1094)	8	144
PF06505	XylR_N	family	Activator of aromatic catabolism	16	107
PF06514	PsbU	family	Photosystem II 12 kDa extrinsic protein (PsbU)	7	142
PF06515	BDV_P10	family	Borna disease virus P10 protein	2	87
PF06532	DUF1109	family	Protein of unknown function (DUF1109)	8	213
PF06544	DUF1115	family	Protein of unknown function (DUF1115)	4	154
PF06547	DUF1117	family	Protein of unknown function (DUF1117)	4	162
PF06552	TOM20_plant	family	Plant specific mitochondrial import receptor subunit TOM20	5	203
PF06568	DUF1127	domain	Domain of unknown function (DUF1127)	16	40
PF06569	DUF1128	family	Protein of unknown function (DUF1128)	6	71
PF06574	Flavokinase	family	Riboflavin kinase (Flavokinase)	66	179
PF06595	BDV_P24	family	Borna disease virus P24 protein	2	201
PF06627	DUF1153	family	Protein of unknown function (DUF1153)	2	91
PF06628	Catalase-rel	family	Catalase-related	24	55
PF06634	DUF1156	family	Protein of unknown function (DUF1156)	7	110
PF06674	DUF1176	family	Protein of unknown function (DUF1176)	5	366
PF06676	DUF1178	family	Protein of unknown function (DUF1178)	6	162
PF06684	DUF1185	family	Protein of unknown function (DUF1185)	7	179
PF06689	zf-C4_ClpX	domain	ClpX C4-type zinc finger	30	42
PF06690	DUF1188	family	Protein of unknown function (DUF1188)	4	267
PF06698	DUF1192	family	Protein of unknown function (DUF1192)	5	66
PF06710	DUF1197	family	Protein of unknown function (DUF1197)	9	93
PF06714	Gp5_OB	domain	Gp5 N-terminal OB domain	2	146
PF06719	AraC_N	family	AraC-type transcriptional regulator N-terminus	24	159
PF06723	MreB_Mbl	family	MreB/Mbl protein	32	341
PF06724	DUF1206	family	Domain of Unknown Function (DUF1206)	15	83
PF06725	3D	domain	3D domain	44	82
PF06734	UL97	family	UL97	8	187
PF06757	Ins_allergen_rp	family	Insect allergen related repeat	15	77
PF06761	ImcF-related	family	ImcF-related	26	365
PF06764	DUF1223	family	Protein of unknown function (DUF1223)	9	265
PF06778	Chlor_dismutase	family	Chlorite dismutase	16	219
PF06779	DUF1228	family	Protein of unknown function (DUF1228)	13	87
PF06810	Phage_GP20	family	Phage minor structural protein GP20	5	162
PF06823	DUF1236	family	Protein of unknown function (DUF1236)	18	78
PF06831	H2TH	domain	Formamidopyrimidine-DNA glycosylase H2TH domain	19	118
PF06838	Alum_res	family	Aluminium resistance protein	14	408
PF06856	DUF1251	family	Protein of unknown function (DUF1251)	9	145
PF06857	MdcD	family	Malonate decarboxylase delta subunit (MdcD)	9	101
PF06860	DUF1252	family	Protein of unknown function (DUF1252)	4	183
PF06882	DUF1263	family	Protein of unknown function (DUF1263)	2	108
PF06890	Phage_Mu_Gp45	family	Bacteriophage Mu Gp45 protein	11	201
PF06897	DUF1269	family	Protein of unknown function (DUF1269)	12	171
PF06902	DUF1271	family	Protein of unknown function (DUF1271)	6	65
PF06903	VirK	family	VirK protein	8	140
PF06919	Phage_T4_Gp30_7	family	Phage Gp30.7 protein	2	121
PF06924	DUF1281	family	Protein of unknown function (DUF1281)	2	155
PF06947	DUF1290	family	Protein of unknown function (DUF1290)	10	109
PF06953	ArsD	family	Arsenical resistance operon trans-acting repressor ArsD	3	123
PF06988	NifT	family	NifT/FixU protein	11	68
PF06995	Phage_P2_GpU	family	Phage P2 GpU	14	124
PF06997	DUF1306	family	Protein of unknown function (DUF1306)	6	258
PF07002	Copine	family	Copine	24	176
PF07015	VirC1	family	VirC1 protein	2	191
PF07021	MetW	family	Methionine biosynthesis protein MetW	7	195
PF07024	ImpE	family	ImpE protein	7	260
PF07030	DUF1320	family	Protein of unknown function (DUF1320)	8	144
PF07044	DUF1329	family	Protein of unknown function (DUF1329)	11	466
PF07049	DUF1332	family	Protein of unknown function (DUF1332)	11	147
PF07070	Spo0M	family	SpoOM protein	9	238
PF07071	DUF1341	family	Protein of unknown function (DUF1341)	5	223
PF07075	DUF1343	family	Protein of unknown function (DUF1343)	12	414
PF07076	DUF1344	family	Protein of unknown function (DUF1344)	6	81
PF07091	FmrO	family	Ribosomal RNA methyltransferase (FmrO)	6	254
PF07112	DUF1368	family	Protein of unknown function (DUF1368)	4	412
PF07118	DUF1374	family	Protein of unknown function (DUF1374)	5	97
PF07120	DUF1376	family	Protein of unknown function (DUF1376)	6	91
PF07122	VLPT	repeat	Variable length PCR target protein (VLPT)	4	30
PF07127	Nodulin_late	family	Late nodulin protein	12	69
PF07145	PAM2	motif	Ataxin-2 C-terminal region	40	18
PF07161	DUF1396	family	Protein of unknown function (DUF1396)	5	210
PF07166	DUF1398	family	Protein of unknown function (DUF1398)	4	125
PF07171	MlrC_C	family	MlrC C-terminus	15	192
PF07177	Neuralized	family	Neuralized	6	71
PF07187	DUF1405	family	Protein of unknown function (DUF1405)	6	181
PF07208	DUF1414	family	Protein of unknown function (DUF1414)	7	69
PF07214	DUF1418	family	Protein of unknown function (DUF1418)	3	104
PF07228	SpoIIE	family	Stage II sporulation protein E (SpoIIE)	173	338
PF07233	DUF1425	family	Protein of unknown function (DUF1425)	6	124
PF07250	Glyoxal_oxid_N	family	Glyoxal oxidase N-terminus	8	286
PF07286	DUF1445	family	Protein of unknown function (DUF1445)	12	149
PF07298	NnrU	family	NnrU protein	7	224
PF07310	DUF1457	domain	Protein of unknown function (DUF1457)	7	224
PF07311	DUF1458	family	Protein of unknown function (DUF1458)	9	67
PF07313	DUF1460	family	Protein of unknown function (DUF1460)	7	252
PF07331	DUF1468	family	Protein of unknown function (DUF1468)	6	147
PF07332	DUF1469	domain	Protein of unknown function (DUF1469)	5	133
PF07334	IFP_35_N	family	Interferon-induced 35 kDa protein (IFP 35) N-terminus	4	88
PF07336	DUF1470	family	Protein of unknown function (DUF1470)	13	210
PF07348	Syd	family	Syd protein	6	178
PF07366	DUF1486	domain	Protein of unknown function (DUF1486)	5	122
PF07371	DUF1490	family	Protein of unknown function (DUF1490)	4	94
PF07386	DUF1499	family	Protein of unknown function (DUF1499)	6	126
PF07389	DUF1500	family	Protein of unknown function (DUF1500)	2	100
PF07390	P30	family	Mycoplasma P30 protein	2	266
PF07397	DUF1502	repeat	Repeat of unknown function (DUF1502)	2	34
PF07398	DUF1503	domain	Protein of unknown function (DUF1503)	5	274
PF07411	DUF1508	domain	Domain of unknown function (DUF1508)	20	50
PF07433	DUF1513	family	Protein of unknown function (DUF1513)	9	370
PF07436	Curto_V3	family	Curtovirus V3 protein	2	87
PF07439	DUF1515	family	Protein of unknown function (DUF1515)	4	124
PF07449	HyaE	family	Hydrogenase-1 expression protein HyaE	9	114
PF07452	CHRD	domain	CHRD domain	27	150
PF07455	Psu	family	Phage polarity suppression protein (Psu)	3	192
PF07467	BLIP	family	Beta-lactamase inhibitor (BLIP)	3	194
PF07479	NAD_Gly3P_dh_C	domain	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	27	188
PF07482	DUF1522	family	Domain of Unknown Function (DUF1522)	4	128
PF07485	DUF1529	family	Domain of Unknown Function (DUF1259)	9	129
PF07498	Rho_N	family	Rho termination factor, N-terminal domain	47	51
PF07499	RuvA_C	domain	RuvA, C-terminal domain	45	52
PF07500	TFIIS_M	domain	Transcription factor S-II (TFIIS), central domain	28	134
PF07511	DUF1525	family	Protein of unknown function (DUF1525)	5	119
PF07515	DUF1528	family	Protein of unknown function (DUF1528)	7	143
PF07517	SecA_DEAD	domain	SecA DEAD-like domain	70	468
PF07533	TCH	domain	Associated with TFs and helicases	15	50
PF07544	CSE2	family	RNA polymerase II transcription mediator	7	92
PF07545	Vg_Tdu	family	Vestigial/Tondu family	3	33
PF07549	Sec_GG	motif	SecD/SecF GG Motif	148	35
PF07558	Shugoshin_N	domain	Shugoshin N terminus	5	57
PF07564	DUF1542	domain	Domain of Unknown Function (DUF1542)	112	91
PF07583	PSCyt2	family	Protein of unknown function (DUF1549)	40	265
PF07586	HXXSHH	family	Protein of unknown function (DUF1552)	13	408
PF07589	VPEP	motif	Protein of unknown function (DUF1555)	18	44
PF07602	DUF1565	family	Protein of unknown function (DUF1565)	9	397
PF07605	DUF1568	family	Protein of unknown function (DUF1568)	19	113
PF07631	PSD4	family	Protein of unknown function (DUF1592)	13	132
PF07638	Sigma70_ECF	family	ECF sigma factor	7	212
PF07640	QPP	motif	QPP	7	36
PF07650	KH_2	domain	KH domain	169	90
PF07665	MpPF2	family	M penetrans paralogue family 2	16	79
PF07685	GATase_3	domain	CobB/CobQ-like glutamine amidotransferase domain	90	198
PF07700	HNOB	domain	Heme NO binding	16	176
PF07706	TAT_ubiq	motif	Aminotransferase ubiquitination site	7	55
PF07722	Peptidase_C26	domain	Peptidase C26	46	261
PF07724	AAA_2	domain	ATPase family associated with various cellular activities (AAA)	146	257
PF07726	AAA_3	family	ATPase family associated with various cellular activities (AAA)	55	138
PF07728	AAA_5	domain	ATPase family associated with various cellular activities (AAA)	41	381
PF07729	FCD	domain	FCD domain	107	144
PF07732	Cu-oxidase_3	domain	Multicopper oxidase	132	131
PF07736	CM_1	domain	Chorismate mutase type I	4	118
PF07743	HSCB_C	domain	HSCB C-terminal oligomerisation domain	28	83
PF07750	GcrA	family	GcrA cell cycle regulator	8	194
PF07755	DUF1611	family	Protein of unknown function (DUF1611)	12	338
PF07782	DC_STAMP	family	DC-STAMP-like protein	11	219
PF07783	DUF1621	family	Protein of unknown function (DUF1621)	8	132
PF07784	DUF1622	family	Protein of unknown function (DUF1622)	14	83
PF07804	HipA_C	domain	HipA-like C-terminal domain	45	101
PF07805	HipA_N	domain	HipA-like N-terminal domain	20	128
PF07813	LTXXQ	motif	LTXXQ motif	48	23
PF07823	CPDase	domain	Cyclic phosphodiesterase-like protein	3	199
PF07828	PA-IL	family	PA-IL-like protein	2	121
PF07830	PP2C_C	domain	Protein serine/threonine phosphatase 2C, C-terminal domain	6	84
PF07833	Cu_amine_oxidN1	domain	Copper amine oxidase N-terminal domain	13	101
PF07836	DmpG_comm	domain	DmpG-like communication domain	12	69
PF07837	FTCD_N	domain	Formiminotransferase domain, N-terminal subdomain	17	202
PF07845	DUF1636	family	Protein of unknown function (DUF1636)	9	127
PF07848	PaaX	family	PaaX-like protein	13	272
PF07849	DUF1641	family	Protein of unknown function (DUF1641)	28	42
PF07852	DUF1642	family	Protein of unknown function (DUF1642)	30	188
PF07863	CtnDOT_TraJ	family	Homologues of TraJ from Bacteroides conjugative transposon	7	77
PF07864	DUF1651	family	Protein of unknown function (DUF1651)	16	88
PF07865	DUF1652	family	Protein of unknown function (DUF1652)	5	71
PF07868	DUF1655	family	Protein of unknown function (DUF1655)	2	55
PF07869	DUF1656	family	Protein of unknown function (DUF1656)	21	67
PF07872	DUF1659	family	Protein of unknown function (DUF1659)	3	72
PF07873	YabP	family	YabP homologue family	7	81
PF07889	DUF1664	family	Protein of unknown function (DUF1664)	8	126
PF07893	DUF1668	family	Protein of unknown function (DUF1668)	25	519
PF07896	DUF1674	family	Protein of unknown function (DUF1674)	19	68
PF07905	PucR	family	Purine catabolism regulatory protein-like family	27	147
PF07908	D-aminoacyl_C	family	D-aminoacylase, C-terminal region	23	50
PF07911	DUF1677	family	Protein of unknown function (DUF1677)	16	165
PF07912	ERp29_N	domain	ERp29, N-terminal domain	3	128
PF07913	DUF1678	family	Protein of unknown function (DUF1678)	4	250
PF07921	Fibritin_C	family	Fibritin C-terminal region	6	123
PF07930	DAP_B	domain	D-aminopeptidase, domain B	2	88
PF07931	CPT	domain	Chloramphenicol phosphotransferase-like protein	7	222
PF07937	DUF1686	family	Protein of unknown function (DUF1686)	8	250
PF07953	Toxin_R_bind_N	domain	Clostridium neurotoxin, N-terminal receptor binding	15	219
PF07963	N_methyl	motif	Prokaryotic N-terminal methylation motif	73	24
PF07969	Amidohydro_3	family	Amidohydrolase family	43	615
PF07972	Flavodoxin_NdrI	family	NrdI Flavodoxin like	38	140
PF07991	IlvN	family	Acetohydroxy acid isomeroreductase, catalytic domain	45	177
PF07992	Pyr_redox_2	domain	Pyridine nucleotide-disulphide oxidoreductase	152	556
PF07993	NAD_binding_4	family	Male sterility protein	109	423
PF07996	T4SS	family	Type IV secretion system proteins	5	243
PF07997	DUF1694	family	Protein of unknown function (DUF1694)	16	131
PF08002	DUF1697	family	Protein of unknown function (DUF1697)	18	138
PF08011	DUF1703	family	Protein of unknown function (DUF1703)	13	620
PF08020	DUF1706	family	Protein of unknown function (DUF1706)	14	177
PF08028	Acyl-CoA_dh_2	domain	Acyl-CoA dehydrogenase, C-terminal domain	38	148
PF08041	PetM	family	PetM family of cytochrome b6f complex subunit 7	14	56
PF08066	PMC2NT	domain	PMC2NT (NUC016) domain	14	96
PF08068	DKCLD	domain	DKCLD (NUC011) domain	18	61
PF08122	NDUF_B12	family	NADH-ubiquinone oxidoreductase B12 subunit family	7	63
PF08182	Pedibin	family	Pedibin/Hym-346 family	2	49
PF08191	LRR_adjacent	family	LRR adjacent	29	65